I'm going to post any Dusk Alpha 0.2 errors I have found. If this isn't the right place for it, direct me to the correct location.
5/2/2012 *Some of these might be a bit specific*
The move "Giggle" shows up as a water-type move on the move selection screen in combat.
In Oak's Lab, the e-mail Oak gets at the beginning says "TRAINERS", not "BRONIES".
In the boxes, it says "PARTY POKéMON" and "PKMN DATA", where it should be ponies.
In Ponyville, the house by the Trolololololol guy, has a Spearow Sprite inside, when it says it's a Pinkie Pie.
The lady outside of that house references "VIRIDIAN FOREST" and "PEWTER CITY".
After the old man shows you how to capture a Ponymon, he gives you a PONY BALL which you put into a Poké ball bag.
Inside your bag, it says "POKé BALLS"
The Ponyville City sign says "VIRIDIAN CITY - The Eternally Green Paradise"
The Ponyville City Gym says "Viridian City Ponymon Gym"
The Menu Sprites for APPLEBLOOM is greyscale. I'm sure there are more of them, I just haven't found any.
Trainer Tips are still Trainer Tips, not Brony Tips. (Sweet Apple Acres, Ponyville's, First in Everfree Forest)
In the Ponydex, the Ponymon have footprints from Pokémon (F. Colgate has a Bird Pokémon print, for example).
Move "GROWL" has the Trainers PONYMON move off screen.
After Capturing a Ponymon, it says "X was added to Pokédex."
Move "GROWL" causes the target to move off screen. This might be intentional, however.
When Capturing a Ponymon, it says "X was added to Pokédex."
When attempting to run from a Brony Battle, it says: "No! There's no running from a TRAINER battle!"
In the Hoofington Ponymon Center, there is a Jigglypuff sprite.
"X is wrapped in ABLOOM's Bind!" (This has already been noted, I'm fairly certain)
Mt. Moon Ponymon Center - The man with the newspaper says "Team Rocket". Ponified name should be implimented.